miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Avena barbata



ABOUT THIS RECORD

ID: MNEST000171
species: Avena barbata
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA

miRNA*
TGCTCACTCCTCTTTCTGTCAGC

mismatches: 2
bulges: 2

View larger
pre-miRNA
TGCAATCTGCAAAGTAAGGTCAGCTCCTCCGCGGAGAATCCCTCAAGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGTCCGGCATAACATGTATG
CCGTCTTCGCCGCGTGCTCACTCCTCTTTCTGTCAGCCTCTTTCTCTTGGGAGTTCACCTTACATTCAGATCCACAAGTGGGTTT


dot-bracket secondary structure
((((...))))..(((((((.(((((((....((((((.......((((.((((((((((.((((((((((.(((((.((....(((((((.....))))
)))))..))))).))))))))))...)))))))))).)))))))))).))))))).))))))).....((((((....)))))).



SIMILARITIES
miRBase bdi-MIR156c: 9e-43

PMRD osa-miR156d: 4e-39

microPC miR156: 5e-23
UniProt no hits

RFAM mir-156: 1e-29
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;